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  1. Shanshan Zhang, Zhenying Cai, and Xuelu Wang* (2009) The primary signaling outputs of brassinosteroids are regulated by abscisic acid signaling. Proc. Natl. Acad. Sci. USA. 106:4543-4548 （IF：9.380）
  2. Xiaofeng Wang, Hai Wang, Yuanli Li, Kaiming Cao and Xiaochun Ge* (2009)  A rice lipid transfer protein binds to plasma proteinaceous sites. Mol. Biol. Rep. 36:745–750 （IF：1.750）
  3.  Hua Jiang, Fen-Fei Wang, Yu-Ting Wu, Xi Zhou, Xue-Yong Huang, Jun Zhu, Ju-Fang Gao, Rui-Bin Dong, Kai-Ming Cao*, and Zhong-Nan Yang* （2009） Multipolar spindle1(MPS1), a novel coiled-coil proteinof Arabidopsis thaliana, is required for meiotic spindleorganization. Plant J.  59:1001-1010 (IF：6.493)
  4. Wang X, Kong H, Ma H* (2009) F-box proteins regulate ethylene signaling and more. Genes Dev.  23:391-396  (IF:13.623)
  5. Ji Qi, Asela J Wijeratne, Lynn P Tomsho, Yi Hu,Stephan C Schuster* and Hong Ma* (2009) Characterization of meiotic crossovers and gene conversion by whole-genome sequencing in saccharomyces cerevisiae. BMC Genomics (in press) (IF：3.926)
  6. Jie Zong, Xuan Yao, Jinyuan Yin, Dabing Zhang, Hong Ma*（2009）Evolution of the RNA-dependent RNA polymerase (RdRP)genes:duplications and possible losses before and after the divergenece of major eukaryotic groups. Gene 447：29–39  (IF：2.578)
  7. Han XW; Wu X; Chung WY, Tao Li , Anton Nekrutenko, Naomi S. Altman , Gong Chen and Hong Ma* (2009) Transcriptome of embryonic and neonatal mouse cortex by high-throughput RNA sequencing Proc. Natl. Acad. Sci. USA. 106 : 12741-12746（IF：9.380）
  8. Xu Guixia, Ma Hong, Nei Masatoshi, Kong Hongzhi. (2009) Evolution of F-box genes in plants: different modes of sequence divergence and their relationships with functional diversification. Proc. Proc. Natl. Acad. Sci. USA 106 (3) 835–840. （IF：9.380）
  9.  Ziqiang Liu, Juan Gao, Aiwu Dong*, Wen-Hui Shen* (2009) A truncated Arabidopsis NUCLEOSOME ASSEMBLY PROTEIN 1, AtNAP1;3T, alters plant growth responses to abscisic acid and salt in the Atnap1;3-2 mutant. Mol. Plant 2:688-699
  10.  Ziqiang Liu, Juan Gao, Yu Fang, Aiwu Dong*, Wen-Hui Shen*(2009) Molecular and reverse genetic characterization of NUCLEOSOME ASSEMBLY PROTEIN1 (NAP1) genes unravels their function in transcription and nucleotide excision repair in Arabidopsis thaliana. Plant J.  59:27-38 (IF：6.493)
  11.  Yu Yu, Zhongyuan Bu, Wen-Hui Shen, Aiwu Dong* (2009) An update on histone lysine methylation in plants. Prog. Nat. Sci. 19:407-413 (IF：0.535)
  12.  Feng Ming，Hong Ma* (2009) A terminator of floral stem cells. Gene Dev. 23:1705-1708  (IF:13.623)
  13.  Yingying Han, Wenzheng Zhang，Bailong Zhang，Shanshan Zhang , Wei Wang, Feng Ming* (2009) One novel mitochondrial citrate synthase from Oryza sativa L. can enhance aluminum tolerance in transgenic tobacco. Mol. Biotechnol.  42:299-305  (IF：1.669)
  14.  Changhua Jiang, Jianyao Xu, Hao Zhang, Xuan Zhang, Jinlei Shi, Min Li, and Feng Ming* (2009) A cytosolic class I small heat shock protein, RcHSP17.8, of Rosa chinensis confers resistance to a variety of stresses to Escherichia coli, yeast and Arabidopsis thaliana. Plant Cell Environ. 32:1046–1059   (IF：4.666)
  15. Lin J*, Yuanjie Jin, Mingqi Zhou, Xin Zhou, Jingya Wang (2009) Molecular cloning and functional analysis of the gene encoding 3-hydroxy-3-methylglutaryl cenzyme A reductase from Jatropha curcas. Afr. J. Biotechnol. 8:3455-3462 (IF：0.547)
  16. Wang P, Zeng J, Liang Z, Miao Z, Sun X*, and Tang K* (2009) Silencing of PMT expression caused a surge of anatabine accumulation in tobacco. Mol. Biol. Rep.   36:2285-2289 (IF：1.75)
  17. Wang, Z., Xiao, Y., Chen, W. and Tang, K*. and Zhang, L* (2009) Functional expression of Vitreoscilla hemoglobin (VHb) in Arabidopsis relieves submergence, nitrosative, photo-oxidative stress and enhances antioxidants metabolism. Plant Sci. 176:66-77  (IF：1.974)
  18. Dai, Y., Qin, Q., Dai, D., Kong, L*, Li, W., Zha, X., Jin, Y. and Tang, K* (2009) Isolation and characterization of a novel cDNA encoding methyl jasmonate-responsive transcription factor TcAP2 from Taxus cuspidata. Biotechnol. Lett. 31:1801-1809  (IF：1.595)
  19. Jiang K, Pi Y, Hou R, Jiang L, Sun X and Tang K (2009) Promotion of nicotine biosynthesis in transgenic tobacco by overexpressing allene oxide cyclase from Hyoscyamus niger.  Planta  229:1057-1063 (IF：3.088)
  20. Jiang K, Pi Y, Hou R, Zeng H, Huang Z, Zhang Z, Sun X, and Tang K (2009) Molecular Cloning and Expression Profiling of the First Specific Jasmonate Biosynthetic Pathway Gene Allene Oxide Synthase from Lonicera japonica. Mol. Biol. Rep., 36:487-493  (IF：1.75)
  21. Pi Y, Jiang K, Cao Y, Wang Q, Huang Z, Li L, Hu L, Li W, Sun X, and Tang K (2009) Allene oxide cyclase from Camptotheca acuminata improves tolerance against low temperature and salt stress in tobacco and bacteria. Mol. Biotechnol. 41:115-122  (IF：1.669)
  22. Jiang K, Pi Y, Huang B, Hou R, Zhang Z, Lin J, Sun X, and Tang, K (2009) Molecular Cloning and mRNA Expression Profiling of the First Specific Jasmonate Biosynthetic Pathway Gene Allene Oxide Synthase from Hyoscyamus niger. Russ. J. Genet.  45:496-505  (IF：0.266)
  23. Xiaojin Luo, Yongcai Fu, Peijiang Zhang, Shuang Wu, Feng Tian, Jiayong Liu, Zuofeng Zhu, Jinshui Yang and Chuanqing Sun (2009) Additive and over-dominant effects resulting from epistatic loci are the primary genetic basis of heterosis in rice. J. Interg. Plant Biol.  51:393-408 (IF：0.859)
  24. Wang CH, Lu M, Yang B, Yang Q, Zhang XD, Hara T & Li B* (2009) Effects of environmental gradients on the performances of four dominant plants in a Chinese saltmarsh: implications for plant zonation. Ecol. Res.  (IF：1.206)
  25. Nie M, Gao LX, Yan JH, Fu XH, Xiao M, Yang J & Li B* (2009) Population variation of invasive Spartina alterniflora can differentiate bacterial diversity in its rhizosphere.Plant Ecol (IF：1.730)
  26. Nie M, Wang M & Li B* (2009) Effects of saltmarsh invasion by Spartina alterniflora on sulfate-reducing bacteria in the Yangtze River estuary. Ecol. Eng.  (IF：1.836)
  27. Nie M, Xian NX, Fu XH, Chen XF & Li B* (2009) The interactive effects of petroleum-hydrocarbon spillage and plant rhizosphere on concentrations and distribution of heavy metals in sediments in the Yellow River Delta, China. J. Hazard. Mater.  (IF：2.975)
  28. Nie M, Zhang XD, Wang JQ, Jiang LF, Yang J, Quan ZX, Cui XH, Fang CM & Li B* (2009) Rhizosphere effects on bacterial abundance and diversity in petroleum-polluted soils: a large-scale field study in Yellow River Delta, China. Soil Biol. Biochem.  41:1535-1542  (IF：2.926)
  29. Cheng XL, Lin GH, Luo YQ, Zhang QF & Li B* (2009) Seasonal variation in CH4 emission and its 13C-isotopic signature from Spartina alterniflora and Scirpus mariqueter soils in an estuarine wetland. Plant Soil (IF：1.998)
  30. Jiang LF, Luo YQ, Chen JK & Li B* (2009) Ecophysiological characteristics of invasive Spartina alterniflora and native species in salt marshes of Yangtze River estuary, China. Estuar. Coast. Shelf S.  81:74-82. (IF：2.072)
  31. Li B*, Liao CZ, Zhang XD, Chen HL, Wang Q, Chen ZY, Gan XJ, Wu JH, Zhao B, Ma ZJ, Cheng XL, Jiang LF & Chen JK (2009) Spartina alterniflora invasions in the Yangtze River estuary, China: an overview of current status and ecosystem effects. Ecol. Eng.  35:511-520  (IF：1.836)
  32. Wang JQ, Tang L, Wang CH, Jiang LF, Chen JK & Li B* (2009) Fine-scale environmental heterogeneities of tidal creeks affect distribution of crab burrows in a salt marsh. Ecol. Eng.  (IF：1.836)
  33. Wu YT, Wang CH, Zhang XD, Zhao B, Jiang LF, Chen JK & Li B* (2009) Effects of saltmarsh invasion by Spartina alterniflora on arthropod community structure and diets. Biol. Invasions  11:635–649  (IF：2.788)
  34. Tang L, Gao Y, Wang CH, Wang JQ, Li B, Chen JK  & Zhao B* (2009) How tidal regime and treatment timing influence the clipping frequency for controlling invasive Spartina alterniflora: implications for reducing management costs. Biol. Invasions  ( IF：2.788)
  35. Tang L, Gao Y, Wang CH, Wang JQ, Li B, Chen JK & Zhao B* (2009) Designing an effective clipping regime for controlling invasive plant Spartina alterniflora in an estuarine salt marsh. Ecol. Eng.  35: 847-881 ( IF：1.836)
  36. Zhao B*, Yan YE, Guo HQ, He MM, Gu YJ & Li B (2009) Monitoring rapid vegetation succession in estuarine wetland using time series MODIS based indicators: an application in the Yangtze River Delta area. Ecol. Indic.  9:346-356  (IF：1.984)
  37. Gao Y, Tang L, Wang JQ, Wang CH, Liang ZS, Li B, Chen JK  &  Zhao B* ( 2009) Clipping at early florescence is more efficient for controlling the invasive plant Spartina alterniflora. Ecol. Res.  24: 1033-1041 (IF：1.206)
  38. Guo HQ, Noormets A,Zhao B*, Chen JQ, Sun G, Gu YJ, Li B & Chen JK (2009) Tidal effects on net ecosystem exchange of carbon in an estuarine wetland. Agr.Forest Meteorol. 149:1820-1828 ( IF：3.668)
  39. Ming F, Liu QK, Shi JL, Wang & Lu B-R* ( 2009) Strategic conservation of orchard germplasm based on indigenous knowledge and genetic diversity: a case study of sour orange populations in China. J. Interg. Plant Biol.  51:100-106  (IF：0.859)
  40. Yan XB, Guo YX, Zhao C, Liu FY & Lu B-R* ( 2009) Intra-population genetic diversity of two wheatgrass species along altitude gradient on the Qinghai-Tibetan Plateau: its implication for conservation and utilization. Conserv. Genet.  10:359–367. ( IF：2.408)
  41. Yan XB, Guo YX, Liu FY, Zhao C, Liu QL & Lu B-R* (2009) Population structure affected by excess gene flow in self-pollinating Elymus nutans and E. burchan-buddae (Triticeae: Poaceae). Popul. Eco. (IF：1.895)
  42. Lu BR*, Cai XX & Jin X (2009) Efficient Indica and Japonica rice identification based on InDel molecular method: its implication in rice breeding and evolutionary research. Prog. Nat. Sci. 19:1241–1252 (IF：0.535)
  43. Zhao R, Xia HB & Lu B-R* (2009) Fine-scale genetic structure enhances biparental inbreeding by promoting mating events between more related individuals in wild soybean populations. Am. J. Bot. 96:1138-1147. (IF： 2.642)
  44. Xia H, Lu B-R*, Su Jun, Chen R, Rong J, Song ZP & Wang F (2009) Normal expression of insect-resistant transgene in progeny of common wild rice crossed with genetically modified rice: its implication in ecological biosafety assessment. Theor. Appl. Genet.  119:635–644. (IF：3.490)
  45. Lu B-R* & Yang C (2009) Gene flow from genetically modified rice to its wild relatives: assessing potential ecological consequences. Biotec. Adv. 27: 1083–1091. (IF：6.110)
  46. Cao QJ, Xia H, Yang X & Lu B-R* (2009) Performance of hybrids between weedy rice and insect-resistant transgenic rice under field experiments: Implication for environmental biosafety assessment. J. Integ. Plant Biol. 51:1137–1147 (IF：0.859)
  47. Luo R,  Wei H, Ye L, Wang K, Chen F, Luo L, Liu L, Li Y, Crabbe MJC, Jin L, Li Y & Zhong Y* (2009) Photosynthetic metabolism of C3 plants shows highly cooperative regulation under changing environments: a systems biological analysis. Proc. Natl. Acad. Sci. USA.  106:847-852. (IF：9.38)
  48. Hao P, Yu Y, Zhang X, Tu K, Fan H &  Zhong Y* (2009) The contribution of cis-regulatory elements to head-to-head gene pairs’ co-expression pattern. Sci.  China Ser. C 52:74-79. (IF：0.661)
  49. Hao P, Zheng S, Ping J, Tu K, Gieger C, Wang-Sattler  R,  Zhong Y* & Li Y* (2009) Human gene expression sensitivity according to large scale meta-analysis. BMC Bioinf. 10:S56. (IF：3.781)
  50. Ren Z, Zhu B, Ma E, Wen J, Tu T, Cao Y, Hasegawa M & Zhong Y* (2009) Complete nucleotide sequence and gene arrangement of the mitochondrial genome of the crab-eating frog Fejervarya cancrivora and evolutionary implications. Gene 441:148-155. (IF：2.578)
  51. Cheng Q, Su Z, Zhong Y* & Gu X* (2009) Effect of site-specific heterogeneous evolution on phylogenetic reconstruction: a simple evaluation. Gene 441:156-162. (IF：2.578)
  52. Liu N, Zhu Y, Wei Z, Chen J, Wang Q, Jian S, Zhou D, Shi J, Yang Y & Zhong Y* (2009) Phylogenetic relationships and divergence times of the family Araucariaceae based on the DNA sequences of eight genes. Chinese Sci. Bull.  54:2648-2655. (IF：0.683)
  53. Han L, Huang Q, Nan P & Zhong Y* (2009) Prediction of potential antimalarial targets of artemisinin based on protein information from whole genome of Plasmodium falciparum. Chinese Sci. Bull. 54:4234-4240. (IF：0.683)
  54. Wedge DE, Tabanca N, Sampson BJ, Werle C, Demirci B, Baser KHC, Nan P, Duan J, Liu ZJ (2009) Antifungal and Insecticidal Activity of two Juniperus Essential Oils. Nat. Prod. Commun. 4:1-5.( IF：0.766)
  55. Li XB, Xie XM, Pei WZ, Chen JK, Song Y, Yang H, Zhou TS* (2009) Improved LC method for the simultaneous determination of five active components in Danshen and its preparations. Chromatography 69:543-548. (IF：1.312 )
  56. Su Z., Xu L., Gu Z and Gu X.* (2009) Origins of digestive RNases in leaf monkeys are an open question. Mol. Phylogenet. Evol 53:610-611. (IF：3.87)
  57. Gu X.*, Su Z., and Huang Y (2009) Simultaneous Expansions of MicroRNAs and Protein-coding Genes by Gene/Genome Duplications in Early Vertebrates. J. Exp. Zool. B. Mol. Dev. Evol. 312:164-170. (IF ：3.58)
  58. Zou Y., Su Z., Yang J., Zeng Y., Gu X* (2009) Uncovering Genetic Regulatory Network Divergence between Duplicate Genes Using Yeast eQTL Landscape. J .Exp. Zool .B .Mol .Dev .Evol  312:722-733. (IF ：3.58)
  59. Chen Q, Su Z, Zhong Y, and Gu, X* (2009) Effect of site-specific heterogeneous evolution on phylogenetic reconstruction: A simple evaluation. Gene 441:156-162. (IF ：2.578)
  60. Huang Y., Zhang Y., Su Z., and Gu X* (2009) Differences in duplication age distributions between human GPCRs and their downstream genes from a network prospective. BMC Genomics  10:S14. (IF ：3.93)
  61. Xu L, Su Z, Gu Z, and Gu X* (2009) Evolution of RNases in leaf monkeys: Being parallel gene duplications or parallel gene conversions is a problem of molecular phylogeny. Mol. Phylogenet. Evol.  50:397-400. (IF ：3.87)
  62. Cao J., Huang S., Yi P., Qian J., Jin L.,Su Z., Yang J. and Liu J (2009) Evolution of the class C GPCR Venus flytrap modules involved positive selected functional divergence. BMC. Evol. Biol. 9:67 (IF：4.05)
  63. Yang J., Zou Y. and Zhu J (2009) Identifying differentially expressed genes in human acute leukemia and mouse brain microarray datasets utilizing QTModel. Funct Integr. Genomics  9:59-66. (IF ：4.18)
  64. Su Z., Zeng Y. and Gu X* (2009) A preliminary analysis of gene pleiotropy estimated from protein sequences. J. Exp. Zool. B. Mol. Dev. Evol.  (IF ：3.58)

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