2012年发表论文

Li, Z., Li, B., Shen, W.H., Huang，H., Dong, A.* (2012) TCP transcription factors interact with AS2 in repression of the class-I KNOX genes in Arabidopsis thaliana. Plant J., 71:99-107.
Sui, P., Jin, J., Ye S, Mu, C., Gao, J., Feng, H., Shen, W.H., Yu, Y.*, Dong, A.*(2012) H3K36 methylation is critical for brassinosteroid-regulated plant growth and development in rice. Plant J., 70:340-347.
Li, Z., Li, B., Dong, A.* (2012) The Arabidopsis transcription factor AtTCP15 regulates endoreduplication by modulating expression of key cell-cycle genes. Mol. Plant, 5:270-280.
Liu, C., Cui, J., Jiang, G., Chen, X., Wang, L., Fang, C.* (2012) Soil heavy metal pollution assessment near the largest landfill of China. Soil and Sediment Contamination (in press).
Cui, J., Meng, H., Nie, M., Chen, X., Li, Z., Bu, N., Li, B., Chen, J.,Quan, Z., Fang, C.*(2012)Bacterial succession during 500 years of soil development under agricultural use. Ecological Research, 27: 793-807.
Cui, J., Liu, C., Li, Z., Wang, L., Chen, X., Ye, Z., Fang, C.* (2012) Long-term changes in topsoil chemical properties under centuries of cultivation after reclamation of coastal wetlands in the Yangtze Estuary, China. Soil & Tillage Research, 123: 50-60.
Wang, H., Lu, Y., Liu, P., Wen, W., Zhang, J.,Ge, X.* Xia, Y. *(2012) The ammonium/nitrate ratio is an input signal in the temperature-modulated, SNC1-mediated and EDS1-dependent autoimmunity of nudt6-2nudt7. Plant Journal, DOI: 10.1111/tpj.12032.
Wang, H., Wang, S., Lu, Y., Sophie, A., Leslie M. H., Ge X. * Xia Y. *(2012) Proteomic Analysis of Early-Responsive Redox-Sensitive Proteins in Arabidopsis. Journal of Proteomic Research, 11, 412–424.
Chen W., Su Z*. and Gu, X.*（2012）A note on gene pleiotropy estimation from phylogenetic analysis of protein sequences. Journal of Systematics and Evolution, doi: 10.1111/j.1759-6831.2012.00217.x.
Su, Z. and Gu, X.* (2012) Revisit on the evolutionary relationship between alternative splicing and gene duplication. Gene., 504(1):102-6.
Zou Y., Su Z.，Huang W. and Gu, X.* (2012) Histone modification pattern evolution after yeast gene duplication. BMC Evol.Biol., 12: 111.
Chen W., Zhou W., Xia T*. and Gu, X.* (2012) A Computational Analysis Framework for Molecular Cell Dynamics: Case-Study of Exocytosis. Plos One, 7(7): e38699.
Guo, H., Weiner, J., Mazer, S., Zhao, Z., Du, G. & Li, B. * (2012) Reproductive allometry in Pedicularis species changes with elevation. Journal of Ecology, 100: 452–458.
Ju, R., Wang, F. & Li, B.* (2012) Critical thermal tolerance to extreme high temperatures in a new invasive lace bug, Corythucha ciliata (Hemiptera: Tingidae) in subtropical China. PLoS One (in press).
Liao, C., Luo, Y., Fang, C., Chen, J. & Li, B.* (2012) The effects of plantation practice on soil properties based on the comparison between natural and planted forests: a meta-analysis. Global Ecology and Biogeography, 21: 318–327.
Lu, M., Zhou, X., Yang, Q., Li, H., Luo, Y., Fang, C., Chen, J., Yang, X. & Li, B.* (2012) Responses of ecosystem carbon cycle to experimental warming: a meta-analysis. Ecology, http://dx.doi.org/10.1890/12-0279.1.
Nie, M., Meng, H., Li, K., Wan, J., Zou, Q., Quan, Z., Fang, C., Chen, J. & Li, B.* (2012) Comparison of bacterial and fungal communities between natural and planted pine forests in subtropical China. Current Microbiology, 64: 34–42.
Pan, X., Jia, X., Chen, J. & Li, B.* (2012) Perspectives and paradigms: For or against: the importance of variation in growth rate for testing the EICA hypothesis. Biological Invasions, 14: 1-8.
Tang, L., Gao, Y., Wang, C., Zhao, B. & Li, B.* (2012) A plant invader declines through its modification to habitats: A case study of a 16-year chronosequence of Spartina alterniflora invasion in a salt marsh. Ecological Engineering, 49: 181-185.
鞠瑞亭, 李博*. (2012) 城市绿地外来物种风险分析体系构建及在上海世博会的应用. 生物多样性, 20: 12-23.
鞠瑞亭, 李慧, 石正人, 李博*. (2012) 近十年中国生物入侵研究进展. 生物多样性, 20: 581-611.
Zhou, M., Wu, L., Liang, J., Shen, C., Lin, J.* (2012) Expression analysis and functional characterization of a novel cold-responsive gene CbCOR15a from Capsella bursa-pastoris. Mol Biol Rep, 39(5):5169-5179.
Wu, L., Zhou, M., Shen, C., Liang, J., Lin, J.* (2012) Transgenic tobacco plants expressing CbCOR15b from Capsella bursa-pastoris show enhanced accumulation and tolerance to cold. J Plant Physiol,169:1408-1416.
Zhou, M., Wu, L., Liang, J., Shen, C., Lin, J.* (2012) Cold induced modulation of CbICE53 gene activating endogenous cold responsive genes enhances cold acclimation in transgenic tobacco. Mol Breeding, DOI 10.1007/s11032-012-9744-5.
Wei, Q., Hu, P., Kuai, B.* (2012) Ectopic expression of an Ammopiptanthus mongolicus H-pyrophosphatase gene enhances drought and salt tolerance in Arabidopsis. Plant Cell Tiss Organ Cult ., 110:359-369.
Wei, Q., Kuai, B. * (2012) Ectopic-overexpression of an HD-Zip IV transcription factor from Ammopiptanthus (Leguminosae) promoted upward leaf curvature and non-dehiscent anther in Arabidopsis thaliana. Plant Cell Tiss Organ Cult., 110:299-306.
Lu, S., Yang, Z., Sun, L., Sun, L., Song, Z., Liu, J.* (2012) Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER Stress responses. Mol. Plant. 5(2): 504-515.
Sun, L., Lu, S., Zhang, S., Zhou, S., Sun , L., Liu, J.* (2012) Lumen-facing domain of bZIP28 determines its subcellular localization and plays important roles in sensing endoplasmic reticulum stress in Arabidopsis. (submitted)Liu, P., Cai, X., Lu, B.* (2012) Single-seeded InDel fingerprints in rice: An effective tool for indica-japonica rice classification and evolutionary studies. Journal of Systematics and Evolution 5: 1-11.
Jiang, Z., Xia, H., Basso, B., Lu, B. * (2012) Introgression from cultivated rice influences genetic differentiation of weedy rice populations at a local spatial scale. Theoretical and Applied Genetics 124: 309-322.
Lu, B. (2012) The challenge of in situ conservation of crop wild relatives in the biotechnology era – A case study of wild rice species. In Maxted N. et al. (Eds.): Agrobiodiversity Conservation. CPI Group (UK) Ltd, Croydon, GR04YY, England, pp. 211-217.
Rong, J., Wang, F., Song, Z., Su, J., Chen, R., Lu, B.* (2012) Scale effect on pollen-mediated gene flow: implications in assessing transgene escape from genetically engineered plants. Annals of Applied Biology 161: 3-11.
Zhu, Y., Ellstrand, N.C., Lu, B.* (2012) Sequence polymorphisms in wild, weedy, and cultivated rice suggest seed-shattering locus sh4 played a minor role in Asian rice domestication. Ecology and Evolution 2(9): 2106–2113.
Yang, C., Yang, X., Fu, Q., Xu, K., Lu, B.* (2012) Limited divergence among populations of rice striped stem borer in southeast China caused by gene flow: Implications for resistance management. Journal of Systematics and Evolution 50 (5): 443-453.
Yang, X., Wang F., Su, J., Lu, B.* (2012) Limited fitness advantages of crop-weed hybrid progeny containing insect-resistant transgenes (Bt/CpTI) in transgenic rice field. PLoS ONE 7(7): e41220.
Arpaia, S., Battafarano, R., Chen, L., Devos, Y., Di, L. G., Lu, B. * (2012) Assessment of transgene flow in tomato and potential effects of genetically modified tomato expressing Cry3Bb1 toxins on bumblebee feeding behaviour. Annals of Applied Biology 161: 151–160.
Lu, B., Wang, W. (2012) Potential Environmental Impacts of Transgene Flow in Rice with a Particular View on Herbicide Resistance. In M J Oliver and Y Li (eds): Plant Gene Containment. Wiley-Blackwell, USA, pp. 3-25.
Lu, B., Yang, X., Xia, H., Wang, W. (2012) Potential ecological impacts caused by insect-resistant transgene flowing into weedy rice. In Xue D.Y. (ed.): Risk Assessment and Regulation of Genetically Modified Organisms. The Proceedings of the International Biosafety Forum - Workshop 4, Beijing, April 28-29, 2011, China Environmental Science Press, Beijing, pp. 55-74.
许锴, 杨箫, 蔡星星, 卢宝荣. * (2012) Bt/CpTI抗虫转基因水稻及其非转基因亲本与普通野生稻杂种F2群体的等位基因偏态分离. 复旦学报 51: 259-268.
Lu B. (2012) China: earlier experiences and future prospects. In DJ Bennett & RC Jennings Eds: Successful Agricultural Innovation in Emerging Economies - New Genetic Technologies for Global Food Production. Chapter 9. Cambridge University Press, pp. 150-166.
Lu, P.#, Han, X.#, Qi, J.#, Yang, J., Wijeratne, A. J., Li T., and Ma, H. * (2012) Analysis of Arabidopsis genome-wide variations before and after meiosis and meiotic recombination by re-sequencing Landsberg erecta and all four products of a single meiosis. Genome Res.,22:508-518. (# co-first authors)
Ma, X., Feng, B., Ma, H.* (2012) AMS-dependent and independent regulation of anther transcriptome and comparison with those affected by Arabidopsis anther genes. BMC Plant Biol.,15: 12-23.
Zhang, L., Ma, H.* (2012) Complex evolutionary history and diverse domain organization of SET proteins suggest divergent regulatory interactions. New Phytologist, 195: 248-263.
Lei, L., Zhou, S., Ma, H.*, Zhang, L.* (2012) Expansion and diversification of the SET domain gene family following whole-genome duplications in Populus trichocarpa. BMC Evol. Biol..(In press)
Zhang, N., Zeng, L., Shan, H., Ma, H.* (2012) Highly conserved low-copy nuclear genes are effective for resolving phylogenetic relationships among angiosperms. New Phytologist, 195：923-937.
Feng, B., Lu, D., Ma, X., Peng, Y., Sun, Y., Ning, G., Ma, H.* (2012) Regulation of Arabidopsis anther transcriptome by DYT1 for pollen development. Plant J..( In press)
Liu, J. #, Wang, H. #, Yang, H., Zhang, Y., Wang, J., Zhao, F.*, Qi, J. * (2012) Composition based classification of short metagenomic sequences elucidates the landscapes of taxonomic and functional enrichment of microorganisms. Nucleic Acids Res..( In Press)
Cao, Y.，Lou, Y., Han, Y.，Shi, J.，Wang, Y., Wang, W., Ming, F. * (2011) Al toxicity leads to enhanced cell division changed photosynthesis in Oryza rufipogon L. Molecular Biology Report, 39:1145–1151.
Xu, J., Zhang, B., Jiang, C., Ming, F. * (2011) RceIF5A, encoding an eukaryotic translation initiation factor 5A in Rosa chinensis, can enhance thermotolerance, oxidative and osmotic stress resistance of Arabidopsis thaliana. Plant Molecular Biology, 75 (1):167-174.
Shi, J., Cao, Y., Fan, X., Li, M., Wang, Y., Ming, F.* (2012) A rice microsomal delta 12 fatty acid desaturase can enhance resistance to cold stress in yeast and Oryza sativa. Molecular Breeding,29(3): 743-757.
Zhang, X., Hu, Y., Jiang, C., Zhang, W., Li, Z., Ming, F. * (2012) Isolation of the Chinese rose smHSP gene promoter and its differential regulation analysis in transgenic Arabidopsis plants. Molecular Biology Report,39:1145–1151.
陈健，鞠元虎，张国庆，陈婧, 南蓬。*(2012) 活性小分子功能筛选平台: M&Functon 数据平台的设计与实现. 复旦学报（医学版）,39(6): 101-108.
李杰辉, 张亮, 陈健，南蓬。* (2012) 基于Hadoop的化合物生物活性分析系统. 计算机工程, 38(13): 48-50.
Gao, J., Zhu, Y., Zhou, W., Molinier, J., Dong, A., and Shen, W.* (2012) NAP1 family histone chaperones are required for somatic homologous recombination in Arabidopsis thaliana. Plant Cell, 24: 1437-1447.
Zhu, Y., Dong, A., and Shen, W.* (2012) Histone variants and chromatin assembly in plant abiotic stress responses. Biochim. Biophys. Acta.., 1819: 343-348.
Zhao, Y., Chen, C., Rong, J., Dong, S., Liao, H., Lu, F., Lu, B., Chen, J., Song, Z.* (2012) Population clonal diversity and fine-scale genetic structure in Oryza officinalis (Poaceae) from China, implications for in situ conservation. Genetic Resources and Crop Evolution 59: 113-124.
Zhu, W., Wang, H., Fujioka, S., Zhou, T., Tian, H., Tian, W.，Wang, X. * (2012) Homeostasis of brassinosteroids regulated by DRL1, a putative acyl-transferase in Arabidopsis. Mol Plant.,
Gao, L., Tang, S., Zhuge, L., Nie, M., Zhu, Z., Li, B., Yang, J.* (2012) Spatial Genetic Structure in Natural Populations of Phragmites australis in a Mosaic of Saline Habitats in the Yellow River Delta, China. PLoS ONE,7(8): e43334. doi:10.1371/journal.pone.0043334.
Geng, Y., Gao, L., Yang, J. * (2012) Epigenetic Flexibility Underlying Phenotypic Plasticity. Progress in Botany, 74:153-163.
张彦, 朱珠, 杨继.* (2012) 以发育模块重复征用和整合为基础的进化创新机制. 植物分类与资源学报, 34(3): 222 -230.
Hu, Z., He, H., Zhang, S., Sun, F., Xin, X., Wang, W., Qian, X., Yang, J., Luo, X .*(2012) A Kelch motif-containg serinethreonine protein phosphatase determines the large grain QTL trait in rice. Journal of Intergrative Plant Biology, DOI: 10.1111/jipb.12008.
Liu, S., Wang, F., Gao, L., Li, R., Deng, G., Gao, H., Yang, J., Luo, X. * (2012) Genetic analysis and fine mapping of LH1 and LH2, a set of complementary genes controlling late heading in rice (Oryza sativa L.). Breeding Science, DOI:10.1270/jsbbs.62.000.
Yang, M., Sun, F., Wang, S., Qi, W., Wang, Q., Dong, X., Yang, J., Luo X.* (2012) Down-Regulation of OsPDCD5, a Homolog of the Mammalian PDCD5, Increases Rice Tolerance to Salt Stress. Molecular Breeding, 2012, DOI 10.1007/s11032-012-9793-9.
Yang, M., Qi, W., Sun, F., Zha, X., Chen, M., Huang, Y., Feng, Y., Yang, J. and Luo, X. *(2012).Overexpression of Rice LRK1, Restricts Internode Elongation by Down-regulating OsKO2. Biotechnology Letters, DOI 10.1007/s10529-012-1054-9.
Qi, W., Zhang, F., Sun, F., Huang, Y., Guan, R., Yang, J. and Luo, X. * (2012) Over-expression of a conserved RNA-binding motif (RRM) domain (csRRM2) improves components of Brassica napus yield by regulating cell size. Plant Breeding, 131: 614-619.
Luo, X., Xin, X., Yang, J. *(2012) Genetic-basis analysis of heterotic loci in Dongxiang common wild rice (Oryza rufipogon Griff.). Genetical Research, 94(2):57-61.
Sun, F., Liu, C., Zhang, C., Qi, W., Zhang, X., Wu, Z., Kong, D., Wang, Q., Shang, H., Qian, X., Li, F., Yang, J. * (2012) A conserved RNA recognition motif (RRM) domain of Brassica napus FCA improvec cotton fiber quality and yield by regulating cell size. Molecular Breeding, 2012, 30: 93–101.
Sun, F., Qi, W., Qian, X., Wang, Q., Yang, M., Dong, X., Yang, J. *(2012) Investigating the role of OsPDCD5, a homolog of the mammalian PDCD5, in programmed cell death by inducible expression in rice. Plant Molecular Biology Report, 2012, 30: 87–98.
赵斌, 郭海强等(译). (2012)《变化中的生态系统：全球变暖的影响》。高等教育出版社。
Zeng, S., Zhang, T., Gao, Y., Li, B., Fang, C., Flory, S.L., Zhao, B.* (2012) Road effects on vegetation composition in a saline environment. Journal of Plant Ecology - UK, 5(2): 206-218.
沈琦, 汪承义, 赵斌. *(2012) 几何活动轮廓模型用于高分辨率遥感影像海岸线自动提取。复旦学报, 51(1): 77-82, 104。
Zeng, L., Chong, L., Tersing, T., Bu, N., Zhao, J., Zhong, Y.*(2012) Microsatellite markers for Saussurea gnaphalodes (Asteraceae), a native Himalayan mountain species. American Journal of Botany, 99: E326-E329.
Zhang, M., Nie, X., Cao, T., Wang, J., Li, T., Zhang, X., Guo, Y., Ma, E. and Zhong, Y.*(2012) The complete mitochondrial genome of the butterfly Apatura metis (Lepidoptera: Nymphalidae). Molecular Biology Reports,39: 6529-6536.
Zhang, T., Qiao, Q., Zhong, Y.*( 2012) Detecting adaptive evolution and functional divergence in aminocyclopropane-1-carboxylate synthase (ACS) gene family. Computational Biology and Chemistry, 38: 10-16.
Yang, Z., Dong, D., Zhang, Z., Crabbe, M., Wang, L. and Zhong, Y.* (2012) Preferential regulation of stably expressed genes in the human genome suggests a widespread expression buffering role of microRNAs. BMC Genomics,13(Suppl 7): S14.
Dong, D., Jin, K., Wu, X., Zhong, Y. * ( 2012) CRDB: Database of Chemosensory Receptor Gene Families in Vertebrate. Plos One,7(2): e31540.
Qiu, Q., Zhang, G., Ma, T., et al. ( 2012) The yak genome and adaptation to life at high altitude. Nature Genetics,44: 946-949.
Zhou, X.*, Zhou, T., Luo, Y. (2012) Uncertainties in carbon residence time and sequestration in terrestrial ecosystems of the Conterminous USA: A Bayesian approach. Tellus B, 64, 17223, http://dx.doi.org/10.3402/tellusb.v64i0.17223.
Zhou, X.*, Zhou, L. (2012) Temperature Sensitivity of Respiratory Processes Vary Across Scales. Journal of Ecosystem & Ecography 2:e109. doi:10.4172/2157-7625.1000e109.
Zhou, X.*, Fei, S., Sherr,y R., Luo, Y. (2012) Root biomass dynamics under warming and doubled precipitation in a tallgrass prairie. Ecosystems 15(4): 542-554.
Niu, S., Luo, Y., Fei, S., Yuan, E., Schimel, D., Ammann, C., Arain, M.A., ..., Zhou, X. (2012) Mechanisms Underlying Thermal Optimality of Net Ecosystem Exchange of Carbon Dioxide. New Phytologist 194: 775–783.