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2015年发表论文

  1. 杨海乐, 陈家宽* (2015). 流域研究中几组易混淆的术语辨析. 中国科技术语. 17 (01): 49-52.
  2. 李琴, 陈家宽* (2015). 中国中亚热带湿润森林区自然保护区社区管理研究—以江西老虎脑自然保护区社区社会经济调查为案例. 生态经济. 31 (06): 166-170.
  3. Liu B., Wei G., Shi J., Jin J., Shen T., Ni T., Shen W., Yu Y.*, Dong A.* (2015). SET DOMAIN GROUP 708, a histone H3 lysine 36-specific methyltransferase, controls flowering time in rice. New Phytol. doi: 10.1111/nph.13768, in press
  4. Jin J., Shi J., Liu B., Liu Y., Huang Y., Yu Y.*, Dong A.* (2015).  MRG702, a reader protein of H3K4me3 and H3K36me3, is involved in brassinosteroid-regulated growth and flowering time control in rice. Plant Physiol. 168(4):1275-85.
  5. Zhang C., Cao L., Rong L., An Z., Zhou W., Ma J., Shen W., Zhu Y.*, Dong A.* (2015). The chromatin-remodeling factor AtINO80 plays crucial roles in genome stability maintenance and in plant development. Plant J. 82(4):655-68.
  6. Bu N., Qu J., Li G., Zhao B., Zhang R., Fang C. (2015). Reclamation of coastal salt marshes promoted carbon loss from previously-sequestered soil carbon pool. Ecological Engineering. 81: 335-339.
  7. Bu N., Qu J., Li Z., Li G., Zhao H., Zhao B., Li B., Chen J., Fang C. (2015). Effects of Spartina alterniflora Invasion on Soil Respiration in the Yangtze River Estuary, China. PLOS ONE. DOI: 10.1371/journal.pone.0121571.
  8. Zhang H., Gu Z., Wu Q., Yang L., Liu C., Ma H., Xia Y., Ge X.* (2015).Arabidopsis PARG1 is the key factor promoting cell survival among the enzymes regulating post-translational poly(ADP-ribosyl)ation. Scientific Reports. Oct 30;5:15892. doi: 10.1038/srep15892.
  9. 刘财丰,吴殷,刘伟伟，葛晓春* (2015). 抑制多聚ADP核糖聚合酶活性改善了拟南芥的抗旱性. 复旦学报, 已接受.
  10. 李超群，王文静，葛晓春* (2015). 拟南芥抗盐突变体的筛选. 复旦学报, 已接受.
  11. Gou J., Li K., Wu K., Wang X., Cantu D., Uavy C., Dobon-Alonso A., Midorikawa T., Inoue K., Sánchez, J., Fu D., Blechl A., Wallington E., Fahima T., Meeta M., Epstein L., Dubcovsky J. * (2015). Wheat Stripe Rust Resistance Protein WKS1 Triggers Cell Death by Reducing Reactive Oxygen Detoxification. The Plant Cell. 27(6): 1755-70. (封面论文, Cover story).
  12. Gu X.*, Tang W. (2015). Model parameters of molecular evolution explain genomic correlations. Briefings in Bioinformatics. doi: 10.1093/bib/bbv098.
  13. Gu X.* (2015). Understanding tissue expression evolution: from expression phylogeny to phylogenetic network. Briefings in Bioinformatics. doi: 10.1093/bib/bbv041.
  14. Gu X.* (2015). Statistical Detection of Differentially Expressed Genes based on RNA-seq: from Biological to Phylogenetic Replicates. Briefings in Bioinformatics. doi: 10.1093/bib/bbv035.
  15. Shen L., Liu G., Zou Y., Zhou Z., Su Z., Gu X.* (2015). The Evolutionary Panorama of Organ-Specifically Expressed or Repressed Orthologous Genes in Nine Vertebrate Species. PLoS ONE. 10(2): e0116872. doi:10.1371/journal.pone.0116872
  16. Wang X., Gao J., Zhu,Zh. Dong X., Wang X., Ren G., Zhou X. *, and Kuai B. * (2015). TCP transcription factors are critical for the coordinated regulation of ISOCHORISMATE SYNTHASE 1 expression in Arabidopsis thaliana. Plant J. 82: 151–162.
  17. Zhu X., Chen J., Xie Z., Gao J., Ren G., Gao Sh., Zhou X. *, and Kuai B. * (2015). Jasmonic acid promotes degreening via MYC2/3/4- and ANAC019/055/072-mediated regulation of major chlorophyll catabolic genes. Plant J. 84: 597–610.
  18. Qiu K., Li Zh., Yang Zh., Chen J., Wu Sh., Zhu X., Gao Sh., Gao J., Ren G., Kuai B. *, Zhou X.* (2015). EIN3 and ORE1 Accelerate Degreening during Ethylene-Mediated Leaf Senescence by Directly Activating Chlorophyll Catabolic Genes in Arabidopsis. PLOS Genet. DOI:10.1371/journal.pgen.1005399
  19. Wu Sh., Li Zh., Yang L., Xie Z., Chen J., Zhang W., Liu T., Gao Sh., Gao J., Zhu Y., Xin J., Ren G. *, Kuai B. * (2015). NON-YELLOWING2 (NYE2), a close paralog of NYE1, plays a positive role in chlorophyll degradation in Arabidopsis. Mol. Plant (accepted)
  20. Ju R., Zhu H., Gao L., Zhou X., Li B.* (2015). Increases in both temperature means and extremes likely facilitate invasive herbivore outbreaks. Scientific Reports. 5: 15715 (DOI: 10.1038/srep15715.
  21. Ju R., Chen Y., Gao L.,  Li B.* (2015). The extended phenology of Spartina invasion alters a native herbivorous insect's abundance and diet in a salt marsh. Biological Invasions. doi: 10.1007/s10530-015-0981-5.
  22. Ma Z., Li B. (2015). Complex ecology of China’s seawall-Response. Science, 347: 1080.
  23. Shang L., Qiu S., Huang J. & Li B.*(2015). Invasion of Spartina alterniflora in China is greatly facilitated by increased growth and clonality: a comparative study of native and introduced populations. Biological Invasions. 17: 1327–1339.
  24. Wan N., Ji X., Jiang J., Li B.* (2015). A modelling methodology to assess the effect of insect pest control on agro-ecosystems. Scientific Reports. 5: 9727 (doi: 10.1038/srep09727).
  25. Wan N., Ji X., Jiang J., Zhang Y., Liang J., Li B.* (2015). An ecological indicator to evaluate the effect of chemical insecticidepollution management on complex ecosystems. Ecological Indicators. 53: 11–17.
  26. Wang J., Bertness M., Li B.*, Chen J., Lu W. (2015). Plant effects on burrowing crab morphology in a Chinese salt marsh: native vs. exotic plants. Ecological Engineering. 74: 376–384.
  27. Yang Q., Li B.*, Siemann E. (2015). Positive and negative biotic interactions and invasive Triadica sebifera tolerance to salinity: a cross-continent comparative study. Oikos. 124: 216–224.
  28. Yang Q., Li B.*, Siemann E. (2015). The effects of fertilization on plant-soil interactions and salinity tolerance of invasive Triadica sebifera. Plant and Soil. 394: 99–107.
  29. Yang Q., Wei S., Shang L., Carrillo J., Gabler C. , Nijjer S., Li B.* , Siemann E. (2015). Mycorrhizal associations of an invasive tree are enhanced by both genetic and environmental mechanisms. Ecography. 38: 1112-1118.
  30. Zhang Z., Pan X., Zhang Z., He K., Li B. (2015). Specialist insect herbivore and light availability do not interact in the evolution of an invasive plant. PLoS ONE. 10: 10.1371/journal.pone.0139234
  31. Lin P., Wu L., Wei D., Chen H., Zhou M., Yao X., Lin J.* (2015). Promoter analysis of cold-responsive (COR) gene from Capsella bursa-pastoris and expression character in response to low temperature. Int J Agric Biol. DOI: 10.17957/IJAB/15.0093
  32. Song Z., Sun L., Lu S., Tian Y., Ding Y., Liu J.* (2015). Transcription factor interaction with COMPASS-like complex regulates histone H3K4 trimethylation for specific gene expression in plants. Proc. Natl. Acad. Sci. USA. 112:2900-2905.
  33. Sun L., Zhang S., Lu S., Liu J.* (2015). Site-1 protease cleavage site is important for the ER stress-induced activation of membrane-associated transcription factor bZIP28 in Arabidopsis. Sci China Life Sci. 58:270-275. (invited)
  34. Zhou S., Sun L., Valdés A., Engström P., Song Z., Lu S., Liu J.* (2015). Membrane-associated transcription factor peptidase, site-2 protease, antagonizes abscisic acid signaling in Arabidopsis. New Phytol. 208:188-197.
  35. Zhang S., Sun L., Dong X., Lu S., Tian W., Liu J.* (2015). Cellulose synthesis genes CESA6 and CSI1 are important for salt stress tolerance in Arabidopsis. J. Integr. Plant Biol. doi: 10.1111/jipb.12442.
  36. Liu P., Dan Z., Wang Z., Li S., Li N., Yan H., Cai X., Lu B.*(2015). Predicting fertility of indica-japonica hybrids by molecular-maker-based genetic divergence index: implications for subspecies-heterosis in hybrid rice breeding. Euphytica. 203: 47-57.
  37. Song Z., Wang Z., Feng Y., Yao N., Yang J., Lu B.* (2015). Genetic divergence of weedy rice populations associated with their geographic location and coexisting conspecific crop: Implications on adaptive evolution of agricultural weeds. Journal of Systematics and Evolution. 53(4): 330-338. (doi: 10.1111/jse.12152)
  38. Yang X., Li L., Cai X., Wang F., Su J., Lu B.* (2015). Efficacy of insect-resistance Bt/CpTI transgenes in F5–F7 generations of rice crop–weed hybrid progeny: implications for assessing ecological impact of transgene flow. Chinese Science Bulletin. 60: 1563-1571.  
  39. Yan H., Ma L., Wang Z., Lin Z., Su J., Lu B.* (2015).  Multiple tissue-specific expression of rice seed-shattering gene SH4 regulated by its promoter pSH4. Rice. 8(1): 1-10.
  40. Han G., Lang J., Sun Y., Wang Y., Zhu Y., Lu B.* (2015). Intercropping of rice varieties increases the efficiency of blast control through reduced disease occurrence and variability. Journal of Integrative Agriculture. (on-line)  
  41. 卢宝荣 (2015). 适合度分析对转基因逃逸潜在环境风险评价的意义. 生物技术通报. 31(4): 7-16.
  42. Huang C. #, Sun R. #, Hu Y., Zeng L., Zhang N., Cai L., Zhang Q., Koch M.A., Al-Shehbaz I., Edger P.P., Pires J.C., Tan D.Y., Zhong Y., Ma H. * (2015). Resolution of Brassicaceae phylogeny using nuclear genes uncovers nested radiations and supports convergent morphological evolution. Mol. Biol. Evol. doi: 10.1093/molbev/msv226
  43. Huang J. #, Cheng Z. #, Wang C., Hong Y., Su H., Wang J., Copenhaver G. P., Ma H. *, Wang Y. * (2015). Formation of interference-sensitive meiotic cross-overs requires sufficient DNA leading-strand elongation. P. Natl Acad. Sci. 112: 12534-12539.
  44. Zeng L. #, Yin Y. #, You C., Pan Q., Xu D., Jin T., Zhang B. *, Ma H. * (2015). Evolution and protein interactions of AP2 proteins in Brassicaceae: evidence linking development and environmental responses. J. Integr. Plant Biol. DOI: 10.1111/jipb.12439
  45. Ye J. #, Zhang Z. #, Long H., Zhang Z., Hong Y., Zhang X., You C., Liang W., Ma H. *, Lu P.* (2015). Proteomic and Phosphoproteomic Analyses Reveal Extensive Phosphorylation of Regulatory Proteins in Developing Rice Anthers. Plant J. 84: 527-544. doi: 10.1111/tpj.13019.
  46. Zhu E. #, You C. #, Wang S., Cui J., Niu B., Wang Y., Qi J., Ma H. *, Chang F.* (2015). The DYT1-interacting proteins bHLH010, bHLH089 and bHLH091 are redundantly required for Arabidopsis anther development and transcriptome. Plant J. 83: 976-990.
  47. Zhang B., Wang L., Zeng L., Zhang C., Ma H. * (2015). Arabidopsis TOE proteins convey a photoperiodic signal to antagonize CONSTANS and regulate flowering time. Genes & Dev. 29: 975-987.
  48. Qian S., Wang Y., Ma H*, Zhang L.* (2015). Expansion and functional divergence of JmjC-containing histone demethylases: significance of duplications in ancestral angiosperms and vertebrates. Plant Physiol. 168: 1321-1337.
  49. Wang Y., Ma H. (2015). Step-wise and lineage-specific diversification of plant RNA polymerase genes and origin of the largest plant-specific subunits. New Phytol. 207:1198-1212.
  50. Yang H.,# Chang F.,#* You C., Cui J., Zhu G., Wang L., Zheng Y., Qi J.,* Ma H.* (2015). Whole-genome DNA methylation patterns and complex function in transcription regulation during flower development in Arabidopsis. Plant J. 81: 268-281.
  51. Sun G., Yu X., Bao C., Wang L., Li M., Gan J., Qu D., Ma J.*, Chen L.* (2015). Identification and characterization of a novel prokaryotic peptide: N-glycosidase from Elizabethkingia meningoseptica. J Biol Chem. 290(12):7452-762.
  52. Chomicki G. ‡*, Bidel L. ‡, Ming F.‡, Coiro M., Zhang X., Wang Y., Baissac Y., Christian J. and Susanne S.(2015). Renner The velamen protects photosynthetic orchid roots against UV-B damage, and a large dated phylogeny implies multiple gains and losses of this function during the Cenozoic. New Phytologist. 205(3): 1330-1341.
  53. Chen X., Lu S., Wang Y., Zhang X., Lv B., Luo L., Xi D., Shen J., Ma H., Ming F.* (2015). OsNAC2 encoding a NAC transcription factor regulates plant height through mediating the gibberellic acid pathway in rice. Plant Journal. 82:301-314.
  54. 吕波，张文政，李春雨，明凤 (2015). MYB家族转录因子OsMYB84通过ABA信号通路参与盐胁迫响应.复旦学报（自然科学版）. 54(5):591-599
  55. 罗莉琼，吕波，陈旭，李捷，明凤* (2015). OsNAC2通过ABA依赖途径负调控水稻的多种非生物胁迫反应.复旦学报（自然科学版）. 已接收
  56. Chen J., Yuan H., Zhang L., Pan H., Xu R., Zhong Y., Chen J., Nan P.* (2015). Cloning, expression and purification of isoflavone-2’-hydroxylase from Astragalus membranaceus Bge. Var. mongolicus (Bge.) Hsiao. Protein Expression and Purification. 107: 83–89.
  57. Chen J., Wu X., Xu Y., Zhong Y., Li Y., Chen J., Li X.*, Nan P.*  (2015). Global transcriptome analysis profiles metabolic pathways in traditional herb Astragalus membranaceus Bge. var. mongolicus (Bge.) Hsiao. BMC Genomics.16 (Suppl 7) S15.
  58. 黄凯, 陈慧杰, 李轩, 刘方奇, 徐烨, 南蓬 (2015).多重PCR靶向富集结合高通量测序筛查结直肠癌中MMR基因的突变. 复旦学报（医学版）.已接收
  59. Wang X.#, Zhang S.#, Dou Y.#, Zhang C., Chen X., Yu B.*, Ren G.* (2015). Synergistic and independent actions of multiple terminal nucleotidyl transferases in 3’ tailing of small RNAs in Arabidopsis. Plos Genetics. 11(4): e1005091. doi:10.1371/journal. pgen.1005091
  60. Zhou W., Zhu Y., Dong A., and Shen W.* (2015). Histone H2A/H2B chaperones: from molecules to chromatin-based functions in plant growth and development. Plant J. 83:78-95.
  61. Berr A., Shafiq S., Hamzavi-Pinon V., Dong A., and Shen W.* (2015). The trxG family histone-methyltransferase SET DOMAIN GROUP 26 promotes flowering via a distinctive genetic pathway. Plant J. 81: 316-328.
  62. Shi J., Dong A., Shen W.* (2015). Epigenetic regulation of rice flowering and reproduction. Front. Plant Sci. 5:803. doi: 10.3389/fpls.2014.00803
  63. Xiao M., Dong S., Li Z., Tang X., Chen Y., Yang S., Wu C., Ouyang D., Fang C., Song Z.* (2015). Effects of water management practices on residue decomposition and degradation of Cry1Ac protein from crop-wild Bt rice hybrids and parental lines during winter fallow season. Ecotoxicology and Environmental Safety. 122:275–289.
  64. Lu X., Zhou C., Xu P., Luo Q., Lian H.*, Yang H.* (2015). Red light-dependent interaction of phyB with SPA1 promotes COP1–SPA1 dissociation and photomorphogenic development in Arabidopsis. Molecular Plant. 8: 467-478.
  65. He S., Wang W., Zhang J., Xu F., Lian H., Li L., Yang H.* (2015). The CNT1 domain of Arabidopsis CRY1 alone is sufficient to mediate blue-light inhibition of hypocotyl elongation. Molecular Plant. 8: 822-825.
  66. Zhang et al. (2015) Structural and functional diversification of HORMA domain-containing proteins. J. Syst. Evol. 53:321-329.
  67. Song et al. (2015) Genetic divergence of weedy rice populations associated with their geographic location and coexisting conspecific crop: Implications on adaptive evolution of agricultural weeds. J. Syst. Evol. 53:330-338.
  68. Zhu et al. (2015) Local habitat condition rather than geographic distance determines the genetic structure of Tamarix chinensis populations in Yellow River Delta, China. Tree Genet. Genomes (in press)
  69. Zhu et al. (2015) Molecular phenotypes associated with anomalous stamen development in Alternanthera philoxeroides. Front. Plant Sci. 6:242.
  70. Gao et al. (2015) Gene expression reaction norms unravel the molecular and cellular processes underpinning the plastic phenotypes of Alternanthera philoxeroides in contrasting hydrological conditions. Front. Plant Sci. 6:991.
  71. Wang Y., Cao L, Zhang Y., Cao Ch., Liu F., Huang F., Qiu Y., Li R.*, and Luo X.* (2015). Map-based cloning and characterization of BPH29, a B3 domain-containing recessive gene conferring brown planthopper resistance in rice. Journal of Experimental Botany. 66(19): 6035-6045.
  72. Xu J., Xu Y., Yonezawa T., Li L., Hasegawa M., Lu F., Chen J., Zhang W. *(2015). Polymorphism and evolution of ribosomal DNA in tea (Camellia sinensis, Theaceae). Molecular Phylogenetics and Evolution. 89: 63-72.
  73. 吕航，姜怡斐，徐颖，周寅，宋志平，张文驹 (2015). 6个亚洲港口城市入侵植物的传粉特征。复旦学报（自然科学版）. 54（1）.
  74. 邵阳,范文，黄连冬，高继银，李昕骥，张文驹 (2015). 基于RNA-seq的崇左金花茶EST-SSR标记开发。复旦学报(自然科学版). 54（6）.
  75. 范文, 徐颖, 许汀, 徐晶, Takahiro Yonezawa, 高继银, 张文驹 (2015). 香港红山茶个体内ITS多态性及物种鉴定的应用。植物学报. 50 (2): 217-226.
  76. Bu N., Zhang R., Zhao B.*, Qu J., Li G., Fang C. (2015). Reclamation of coastal salt marshes promoted carbon loss from previously-sequestered soil carbon pool. Ecological Engineering, 81: 335-339.
  77. Zhang T., Qi J., Gao Y., Ouyang Z., Zeng S., Zhao B.*(2015). Detecting soil salinity with MODIS time series VI data. Ecological Indicators. 52: 480-489.
  78. 王丹，张荣，熊俊，郭海强*，赵斌 ( 2015). 互花米草入侵对滨海湿地土壤碳库的贡献：基于稳定同位素的研究. 植物生态学报. 39: 941-949.
  79. He H., Yang T., Wu W., and Zheng B.* (2015). Small RNAs in pollen. Sci China Life Sci. 58:246-252.
  80. An M., Zeng L., Zhang T., Zhong Y.*(2015). Phylogeography of Thlaspi arvense (Brassicaceae) in China Inferred from Chloroplast and Nuclear DNA Sequences and Ecological Niche Modeling[J]. International Journal of Molecular Sciences. 16(6):13339-13355.
  81. Chen J., Wu X., Xu Y., Zhong Y. (2015). Global transcriptome analysis profiles metabolic pathways in traditional herb Astragalus membranaceus Bge. var. mongolicus (Bge.) Hsiao[J]. Bmc Genomic. 16.
  82. Lin L., Cai Q., Zhang X., Zhong Y. (2015). Two less common human microRNAs miR-875 and miR-3144 target a conserved site of E6 oncogene in most high-risk human papillomavirus subtypes[J]. Protein & Cell. 2015, 6(8):1-14.
  83. Zhou G., Wang W., Xie X., Qin M., Kuai B., and Zhou T.* (2015). Post-harvest induced production of salvianolic acids and significant promotion of antioxidant properties in roots of Salvia miltiorrhiza (Danshen). Molecules. 19:7207-7222.
  84. Pan H., Li X., Cheng X., Wang X., Fang C., Zhou T.* and Chen J.* (2015). Evidence of calycosin-7-O-β-D-glucoside’s role as a major antioxidant molecule of Astragalus membranaceus Bge. var. mongholicus (Bge.) Hsiao plants nuder freezing strees. Environmental and Experimental Botany. 109:1.

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