2017年发表论文

Feng J.#, Ding C.#, *, Qiu N.#, Ni X.#, Zhan D.#, Liu W., Xia X., Li P., Lu B., Zhao Q., Nie P., Song L., Zhou Q., Lai M., Guo G., Zhu W., Ren J., Shi T.*, Qin J.* (2017). Firmiana: Towards a One-stop Proteomic Cloud Platform for Data Processiong and Analysis. DOI: 10.1038/nbt.3825, Nature Biotechnology. (#Co-first author, *Co-corresponding author)
Zhou Q., Liu M., Xia X., Gong T., Feng J., Liu W., Liu Y., Zhen B., Wang Y., Ding C.*, Qin J.* (2017). A Mouse Tissue Transcription Factor Atlas. Nature Communications. DOI: 10.1038/ncomms15089. (*Co-corresponding author)
Lang X., Tang T., Jin T. Ding C.*, Zhou R.*, Jiang W.* (2017). TRIM65 Catalyzed Ubiquitination is Essential for MDA5-mediated Antiviral Innate Immunity. Journal of Experimental Medicine. 214(2): 459~473. (*Co-corresponding author)
Liu M., Ge R., Liu W., Liu Q., Xia X., Lai M., Liang L., Li C., Song L., Zhen B., Qin J., Ding C. * (2017). Differential proteomics profiling identifies lipid droplet proteins and biological functions in high fat diet induced fatty livers. J Lipid Res. pii: jlr.M071407. doi: 10.1194/jlr.M071407. [Epub ahead of print]
Zhu Y.*, Rong L., Luo Q., Wang B., Zhou N., Yang Y., Zhang C., Feng H., Zheng L., Shen W., Ma J.*, Dong A.* (2017). The Histone Chaperone NRP1 Interacts with WEREWOLF to Activate GLABRA2 in Arabidopsis Root Hair Development. Plant Cell. 29(2):260-276. doi: 10.1105/tpc.16.00719.
Li C., Liu Y., Sun W., Yu Y.*, Dong A.* (2017). Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development. J Integr Plant Biol. doi: 10.1111/jipb.12603.
Liu K., Yu Y., Dong A.*, Shen W.* (2017). SET DOMAIN GROUP701 encodes a H3K4-methytransferase and regulates multiple key processes of rice plant development. New Phytol. 215(2):609-623. doi: 10.1111/nph.14596.
Yan D., Li J., Pei J., Cui J., Nie M., Fang C.* (2017). The temperature sensitivity of soil organic carbon decomposition is greater in subsoil than in topsoil during laboratory incubation. Scientific Reports. 7: 5181 DOI:10.1038/s41598-017-05293-1 4.
Li J., Pei J., Cui J., Chen X., Li B., Nie M., Fang C.* (2017). Carbon quality mediates the temperature sensitivity of soil organic carbon decomposition in managed ecosystems. Agriculture, Ecosystems and Environment. 250:44-50.
Tang J., Cheng H., Fang C. * (2017). The temperature sensitivity of soil organic carbon decomposition is not related to labile and recalcitrant carbon. PLOS ONE. |https://doi.org/10.1371/journal.pone.0186675.
Pei J., Zhuang S., Cui J., Li J., Li B., Wu J., Fang C.* (2017). Biochar decreased the temperature sensitivity of soil carbon decomposition in a paddy field. Agriculture, Ecosystems and Environment. 249:156–164.
Lee Z., Bu N., Cui J., Chen X., Xiao M., Wang F., Song Z.,Fang C.* (2017). Effects of long-term cultivation of transgenic Bt ric (Kefeng-6) on soil microbial functioning and C cycling. Scientific Reports. 7: 4647 OI:10.1038/s41598-017-04997-8.
Cui J., Chen X.，Nie M.， Fang S., Tang B.，Quan Z., Li B.，Fang C. * (2017). Effects of Spartina alterniflora Invasion on the Abundance, Diversity, and Community Structure of Sulfate Reducing Bacteria along a Successional Gradient of Coastal Salt Marshes in China. Wetlands. 37:221-232.
Liu C., Wu Q., Liu W., Gu Z., Wang W., Xu P., Ma H. and Ge X. * (2017). Poly(ADP-ribose) polymerases regulate root cell division and inhibition of PARP activities enhances root development. Journal of Integrative Plant Biology. 59(7): 459-474.
Yao, L., Cheng, X., Gu, Z., Huang, W., Li, S., Wang, L., Wang, Y., Xu, P., Ma, H. and Ge, X. * (2017). An AWPM-19 family protein OsPM1 mediates abscisic acid influx and drought response in rice. Plant Cell. in revision.
王文静, 吴巧, 葛晓春* (2017). 拟南芥多聚ADP-核糖化修饰蛋白的富集和鉴定. 《复旦学报(自然科学版).(4):403-411.
Li Q., Wang Sh., and Gou J. (2017). A split ubiquitin system to reveal topology and released peptides of membrane proteins. BMC Biotechnol. Sep 2;17(1):69.
Sa Z., Zhou J,, Zou Y.*, Su Z.*, Gu X.* (2017). Paralog-divergent Features May Help Reduce Off-target Effects of Drugs: Hints from Glucagon Subfamily Analysis. Genomics Proteomics Bioinformatics. pii: S1672-0229(17)30084-0. doi: 10.1016/j.gpb.2017.03.004.
Zhou Z., Zou Y., Liu G., Zhou J., Zhao S., Su Z.*, Gu X.* (2017). Mutation-Profile-Based Methods for Understanding Selection Forces in Cancer Somatic Mutations: A Comparative Analysis. Oncotarget. 8(35): 58835–58846.
Wang Y., Su Z.*, Gu X.* (2017).What is the main mechanism of the origin of phosphorylation sites? Still an open question. Journal of Systematics and Evolution. 55 (3), 231-234.
Chen J.#, Zhu X.#, Ren J., Qiu K., Li Z., Xie Z., Gao J., Zhou X.*, Kuai B.* (2017). Suppressor of overexpression of CO 1 negatively regulates dark-induced leaf degreening and senescence by directly repressing pheophytinase and other senescence-associated genes in Arabidopsis. Plant Physiology. 173(3):1881-1891.
Kuai B., Chen J., Hörtensteiner S.* (2017). The biochemistry and molecular biology of chlorophyll breakdown. Journal of Experimental Botany. doi.org/10.1093/jxb/erx322.
Li Z., Wu S., Chen J., Wang X., Gao J., Ren G.*, Kuai B.* (2017). NYEs/SGRs-mediated chlorophyll degradation is critical for detoxification during seed maturation in Arabidopsis. Plant Journal. doi: 10.1111/tpj.13710.
Zhu X.#, Chen J.#, Qiu K.#, Kuai B.* (2017). Phytohormone and light regulation of chlorophyll degradation. Frontiers in Plant Science. doi: 10.3389/fpls.2017.01911.
Ju R., Luo Q., Gao L., Yang J. & Li B.* ( 2017). Identification of HSP70 gene in Corythucha ciliata and its expression profiles under laboratory and field thermal conditions. Cell Stress and Chaperones. DOI 10.1007/s12192-017-0840-7.
Ju R., Gao L., Wei S. & Li B.* ( 2017). Spring warming increases the abundance of an invasive specialist insect: links to phenology and life history. Scientific Reports.7:14805 (DOI:10.1038/s41598-017-14989-3).
Wan N., Deng J., Huang K., Ji X., Zhang H., Jiang J. & Li B.* (2017). Nucleopolyhedrovirus infection enhances plant defences by increasing plant volatile diversity. Biocontrol Science and Technology. 27: 1292–1307 (https://doi.org/10.1080/09583157.2017.1393498).
Yang C., Li L.* (2017). Hormonal Regulation in Shade Avoidance. Front Plant Sci. 8:1527.
Li, L., Li Y., Jia Y., Caicedo A.*, Olsen K.* (2017). Signatures of adaptation in the weedy rice genome. Nature Genetics. 49: 811-814.
Li, M., Shi, F., Li, Y., Jiang, P., Jiao, L., Liu, B.*, and Li, L.* (2017). Genome-wide variation patterns uncover the origin and selection in cultivated ginseng (Panax ginseng Meyer). Genome Biology and Evolution. 9:2159-2169.
Zhou M., Chen H., Wei D., Ma H., Lin J.* (2017). Arabidopsis CBF3 and DELLAs positively regulate each other in response to low temperature. Sci. Rep. 2017,7: 39819.
Li A.#, Zhou M.#, Wei D., Chen H., You C., Lin J.* (2017). Transcriptome profiling reveals the negative regulation of multiple plant hormone signaling pathways elicited by overexpression of C-repeat binding factors. Front Plant Sci. 2017, 8: 1647.
Li W., Zhou M., Zheng Y., Lin P., Yao X., Lin J.* (2017). Characterization of CbCAX51, a cold responsive Ca2+/H+ exchanger from Capsella bursa-pastoris modulating cold tolerance in plants. Int. J. Agric. Biol. 2017, 19: 817-824.
Lin P., Shen C., Zhou M., Yao X.*, Lin J.*(2017). Improving plant freezing tolerance by gene co-transfer of a single stress-inducible CbCBF genes and CbICE53 in tobacco. Biol. Plant. 61: 520-528.
Yan H., Li L., Liu P., Jiang X., Wang L., Fang J., Lin Z., Wang F., Su J., Lu B.* (2017). Reduced weed seed shattering by silencing a cultivated rice gene: strategic mitigation for escaped transgenes. Transgenic Research. 26: 465-475 (doi:10.1007/s11248-017-0016-3)
Wang L., Lu B.* (2017). Model-based calculating tool for pollen-mediated gene flow frequencies in plants. AoB Plants. 9: 1-11. (DOI: 10.1093/aobpla/plw086)
Yang X., Li L., Jiang X., Wang W., Cai X., Su J., Wang F., Lu B* ( 2017). Genetically engineered rice endogenous 5-enolpyruvoylshikimate-3-phosphate synthase (epsps) transgene alters phenology and fitness of crop-wild hybrid offspring. Scientific Report. 7:6834 (DOI:10.1038/s41598-017-07089-9).
Wang Z., Wang L., Wang Z., Lu B.* (2017). Non-random transmission of parental alleles into crop-wild and crop-weed hybrid lineages separated by a transgene and neutral identifiers in rice. Scientific Report. 7: 10436 (DOI:10.1038/s41598-017-10596-4).
Song D., Wang Z., Song Z., Zhou C., Xu P., Yang J., Yang J, Lu B.* (2016). Increased novel SNPs in weedy rice populations associated with the change of farming styles: Implications in adaptive mutation and evolution. Journal of Systematics and Evolution. 55(2): 149-157. (DOI: 10.1111/jse.12230)
Xin J., Yu C., Ping L., Chen L., Cai X., Jun R., Lu B.* (2017). Introgression from cultivated rice alters genetic structures of wild relative populations: implications for in situ conservation. AoB Plants. (on-line) doi.org/10.1093/aobpla/plx055.
Li, X., Ye, J., Ma, H. and Lu, P. * (2017). Proteomic analysis of lysine acetylation provides strong evidence for acetylated proteins involved in plant meiosis and tapetum function. Plant J. (doi: 10.1111/tpj.13766) (Published online)
Xiang Y., Huang C.., Hu Y., Wen J., Li S., Yi T., Chen H., Xiang J., Ma H.* (2017). Evolution of Rosaceae fruit types based on nuclear phylogeny in the context of geological times and genome duplication. Mol. Biol. Evol. 34: 262-281. DOI: 10.1093/molbev/msw242.
Zeng L., Zhang N., Zhang Q., Endress P.K., Huang J., Ma H.* (2017). Resolution of deep eudicot phylogeny and their temporal diversification using nuclear genes from transcriptomic and genomic datasets. New Phytol. 214: 1338-1354. DOI: 10.1111/nph.14503.3.
Chang F., Cui J., Wang L., Ma H.* (2017). REPLY: The BIF Domain is structurally and functionally distinct from other types of ACT-like domains. Plant Cell. 29:1803-1805.
Shi Q., Zhou L., Wang Y.*, Ma H.* (2017). A strategy for screening monoclonal antibodies for Arabidopsis flowers. Front Plant Sci. 8:270. doi: 10.3389/fpls.2017.00270.
12. Wang S., Lu J., Song X., Ren S., You C., Xu J., Liu C., Ma H., Chang F.* (2017). Cytological and transcriptomic analyses reveal important roles of CLE19 in pollen exine formation. Plant Physiol. 175: 1186-1202.
13. Zhang S.#, Yang H.#, Ding L., Song Z., Ma H., Chang F.*, Liu J.* (2017). Tissue-specific transcriptomics reveals an important role of the unfolded protein response in maintaining fertility upon heat stress in arabidopsis. Plant Cell. 29: 1007-1023.
陆佳楠, 叶娟英, 许俊旭, 马红, 常芳* (2017). 定量蛋白质组学方法揭示受体蛋白激酶EMS1调控拟南芥花药发育的下游信号网络。植物生理学报.53: 1287–1296.
Zhu Y.*, Rong L., Luo Q., Wang B., Zhou N., Yang Y., Zhang C., Feng H., Zheng L., Shen W., Ma J.*, Dong A.* (2017). The Histone Chaperone NRP1 Interacts with WEREWOLF to Activate GLABRA2 in Arabidopsis Root Hair Development. Plant Cell. 29(2):260-276. doi: 10.1105/tpc.16.00719.
Yu X., Li X., Zheng L., Ma J.*, Gan J.* (2017). Structural and functional studies of a noncanonical Dicer from Entamoeba histolytica. Scientific Reports. 7: 44832.
Chen Y., Zhang J., Liu H., Gao Y., Li X., Zheng L.，Cui R., Yao Q., Rong L., Li J., Huang Z.，Ma J.*, Gan J.* (2017). Unique 5'-P recognition and basis for dG:dGTP misincorporation of ASFV DNA polymerase X. PLoS Biology. 15(2):e1002599.
Mao C., Lu S., Lv B., Shen J., He J., Luo L., Xi D., Chen X., Ming F. *(2017). The NAC transcription factor OsNAC2 accelerates leaf senescence by directly fine-tuning abscisic acid biosynthesis and activating senescence-associated genes in rice. Plant Physiology. 174：1747-1763.
Shen J. #1, Lv B. #1, Luo L. #1, He J. 2 Mao C. 1, Xi D. 1, and Ming F. 1*(2017). The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice. Scientific Report.
Li P., Li Y., Zheng X., Ding L., Ming F. *(2017). Aihu Pan. Weiguang Lv, Xueming Tang*. Rice straw decomposition affects diversity and dynamics of soil fungal community, but not bacteria. J Soils Sediments. 2017 DOI 10.1007/s11368-017-1749-6.
何建美，吕波，奚丹丹，邓其明，明凤*(2017). OsNAC2转录因子介导生长素代谢通路调节水稻早期根的发育.复旦学报（自然科学版）.56(4):403-412.
Yuan H., Wu J., Wang X., Chen J., Zhong Y., Huang Q.* Nan P.*(2017). Computational identification of amino-acid mutations that further improve the activity of a Chalcone–Flavonone Isomerase from Glycine max. Frontiers in Plant Science. 8: 248.
Li, J., Pei, J., Cui, J., Chen, X., Li, B., Nie, M.*, Fang, C.* (2017). Carbon quality mediates the temperature sensitivity of soil organic carbon decomposition in managed ecosystems. Agriculture, Ecosystems & Environment. 250, 44-50.
Yan, D., Li, J., Pei, J., Cui, J., Nie, M.*, Fang, C.* (2017). The temperature sensitivity of soil organic carbon decomposition is greater in subsoil than in topsoil during laboratory incubation. Scientific Reports. 7.
Nie, M., Shang, L., Liao, C., Li, B.(2017). Changes in primary production and carbon sequestration after plant invasions. in M. Vila & P. Hulme, editors. Impact of Plant Invasions on Ecosystem Services. Springer, New York.
Li Z., Wu S., Chen J., Wang X., Gao J., Ren G.* and Kuai B.* (2017). NYEs/SGRs-Mediated Chlorophyll Degradation is Critical for Detoxification during Seed Maturation in Arabidopsis. Plant J. 92: 650–661.
Ren G.*, Wang X., Yu B.* (2017). Analysis of the Uridylation of Both ARGONAUTE-Bound MiRNAs and 5'Cleavage Products of Their Target RNAs in Plants. Methods in molecular biology. (Clifton, NJ) 1640:23.
Dou Y., Li S., Yang W., Liu K., Du Q., Ren G.*, Yu B.*, Zhang C.* (2017). Genome-wide Discovery of Circular RNAs in the Leaf and Seedling Tissues of Arabidopsis Thaliana. Curr Genomics. 18(4):360-365.
Liu K., Yu Y., Dong A.*, Shen W.* (2017). SET DOMAIN GROUP701 encodes a H3K4-methytransferase and regulates multiple key processes of rice plant development. New Phytol. 215(2):609-623. doi: 10.1111/nph.14596.
Pinon V., Yao X., Dong A., Shen W.* (2017). SDG2-Mediated H3K4me3 Is Crucial for Chromatin Condensation and Mitotic Division during Male Gametogenesis in Arabidopsis. Plant Physiol. 174(2):1205-1215. doi: 10.1104/pp.17.00306.
Dong S., Xiao M., Ouyang D., Rong J., Lu B., Su J., Wang F., Chen J., Song Z.* (2017). Persistence of transgenes in wild rice populations depends on the interaction between genetic background of recipients and environmental conditions. Ann. Ap. Biol. 171: 202-203.
Li L., Stephen S., Lan Z., Chen J., Song Z.* (2017). Water depth affects reproductive allocation and reproductive allometry in the submerged macrophyte Vallisneria natans. Scientific Reports. 41598-017-16719-1.
Li L., Lan Z., Chen J., Song Z.*(2017). Allocations to sexual and clonal reproduction and their plasticity in Vallisneria spinulosa along a water-depth gradient. Ecosphere.（in press）
Wan Q. #, Wang Y.*, Tang H.* (2017). Quantitative 13C traces of glucose fate in hepatitis B virus infected hepatocytes. Anal Chem. 89 (6):3293.
Wang J. #, Zhou L., Lei H., Hao F., Liu X., Wang Y.*, Tang H.* (2017). Simultaneous quantification of amino metabolites in multiple metabolic pathways using ultra-high performance liquid chromatography with tandem-mass spectrometry. Sci Rep. DOI 10.1038/s41598-017-01435-7.
Liu C. #, Du B. #, Hao F. #, Lei H., Wan Q., He G.*, Wang Y.*, Tang H.* (2017). Dynamic metabolic responses of brown planthoppers towards susceptible and resistant rice plants. Plant Biotechnol J. doi: 10.1111/pbi.12721.
Gou J.# Hao F.#, Huang C.#, Kwon, M., Chen F., Li C., Liu C., Ro D., Tang H.*, Zhang Y.* (2017). Discovery of a non-stereoselective cytochrome P450 catalyzing either 8α- or 8β-hydroxylation of germacrene A acid from the Chinese medicinal plant. Inula hupehensis. Plant J. doi: 10.1111/tpj.13760.
Chen F.#, Liu C., Zhang J., Lei H., Li H., Liao Y., Tang H.* (2017). Combined metabonomic and quantitative RT-PCR analyses revealed metabolic reprogramming associated with Fusarium graminearum resistance in transgenic Arabidopsis thaliana. Frontiers Plant Science. Accepted.
He X.#, Wang S., Shi J., Sun Z., Lei Z., Yin Z., Qian Z., Tang H.*, Xie H.* (2017). Influence of genotype and environment on volatile profile of Valerianae Jatamansi Rhizoma et Radix. Frontiers Plant Science. Revision.
Wang Y.* and Copenhaver G.*(2017). Meiotic Recombination: Mixing It Up in Plants. Annual Review of Plant Biology. 69.
Su H.#, Chen Z.#, Huang J., Lin J., Copenhaver G., Ma H., Wang Y.*(2017).Arabidopsis RAD51, RAD51C and XRCC3 proteins form a complex and facilitate RAD51 localization on chromosomes for meiotic recombination. PLOS Genetics. 31;13(5):e1006827. doi: 10.1371.
Zhou L., Han J., Chen Y.,Wang Y.*, Liu Y.* (2017). Bivalent Formation 1, a plant-conserved gene, encodes an OmpH/coiled-coil motif-containing protein required for meiotic recombination in rice. Journal of Experimental Botany. doi:10.1093.
Shi J., Zhou L., Wang Y.*, Ma H.*(2017). A Strategy for Screening Monoclonal Antibodies for Arabidopsis Flowers. Frontiers in Plant Science. doi: 10.3389.
Fu W., Liu X. , Zhang N., Song Z., Zhang W., Yang J., Wang Y.* (2017). Testing the hypothesisof multiple origins of holoparasitism in Orobanchaceae: phylogenetic evidence from the last two unplaced holoparasitic genera, Gleadovia and Phacellanthus. Frontiers in Plant Sciences. 8: 1380. doi: 10.3389/fpls.2017.01380.
王玉国* (2017).自然杂交与物种形成.生物多样性.25(6):565-576.doi: 10.17520/biods.2017041.
李燕骄，刘雅慧，周旭珍，李容柏*，罗小金*（2017）.水稻显性矮杆基因LB4D的精细定位。基因组学与应用生物学.（在版）
曹昌翔，吴佳炳，王莹，杨金水，罗小金* (2017).水稻黄绿叶基因YGLOSH的定位克隆。复旦学报（自然科学版）.56（6）.
Cheng S., Qiong L., Lu F., Yonezawa T., Yin G., Song Z., Wang Y., Yang J., Zhang W.* (2017). Phylogeography of Sophora moorcroftiana Supports Wu's Hypothesis on the Origin of Tibetan Alpine Flora. The Journal of Heredity. 108(4):405-414.
Zhang Y., Li Q., Huang J., Wu Z., Huang J., Huang L., Li Y., Ye J., Zhang X.* (2017). An Approach to Incorporate Multi-Enzyme Digestion into C-TAILS for C-Terminomics Studies. Proteomics. Nov 19. doi: 10.1002/pmic.201700034.
Ma J., Xiao X.*, Bu R., Russell D., Hu Y., Chen B., Li X., Zhao B. (2017). Application of the space-for-time substitution method in validating long-term biomass predictions of a forest landscape model. Environmental Modelling & Software. 94: 127-139.
Ma J., Xiao X.*, Qin Y., Chen B., Hu Y., Li X., Zhao B. (2017). Estimating aboveground biomass of broadleaf, needleleaf, and mixed forests in Northeastern China through analysis of 25-m ALOS/PALSAR mosaic data. Forest Ecology and Management. 389: 199-210.
李瑶，肖向明，李香萍，马俊，陈帮乾，秦元伟，董金玮，赵斌. (2017). 中国森林破碎化多尺度评价。生物多样性. 25 (4): 372-381.
侯颖，李红，赵敏，熊俊，戴圣骐，赵斌，胡静，郭海强*. (2017). 从湿地到农田：围垦对生态系统碳排放的影响。应用生态学报. 28(8): 2517-2526.
曹建军、赵斌、张剑、张世虎、董小刚(译). (2017).《生态系统生态学》. 科学出版社（ISBN：9787030511102）.
Su C., Li Z., Cheng J., Li L., Zhong S., Liu L., Zheng Y., Zheng B.* (2017). The protein phosphatase 4 and SMEK1 complex dephosphorylates HYL1 to promote miRNA biogenesis by antagonizing the MAPK cascade in Arabidopsis. Dev Cell. 41:527-539.
Cheng J., Zhang Y., Zhang X., Wang T., Zheng B.* (2017). A lariat-derived circular RNA is required for plant development in Arabidopsis. Sci China Life Sci. Oct 31. doi: 10.1007/s11427-017-9182-3.
Li L., Wu W., Zhao Y., Zheng B.* (2017). A reciprocal inhibition between ARID1 and MET1 in male and female gametes in Arabidopsis. J Integr Plant Biol. 59:657-668.